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Centre for Plant Biotechnology & Molecular Biology (CPBMB)

Publications

 Research Publications in peer review journals

  1. Kumar, D. K., Deepu, M., Nazeem, P. A., Abida, P. S., Thomas, G. C. and Valsala, P. A. A comparative proteome assay on the quality of yardlong bean pods as influenced by the organic and inorganic nourishment systems. Acta Physiologiae Plantarum., In press.
  2. John, J. K., Roy,Y. C.,Krishnaraj,M. V.,Nair,R. A., Deepu, M. and Bhat, K. V. Momordicacochinchinensis (Lour.) Spreng. subsp. andamanica  J. John, Roy et  Krishnaraj subsp. nov. (Cucurbitaceae) endemic to Andaman Islands, India.Genetic Resources and Crop Evolution., In press.
  3. Manjesh, S., Abida, P.S.,  Valsala, P.A.,  Rosemary, F. and George, T. 2017. Identification and characterization of  differentially expressed genes responsible for drought tolerance in rice mediated by Pseudomonas fluorescens. Rice Science., In press.
  4. Nabarun, R., Nazeem, P.A., Babu, T.D., Abida, P.S., Arunaksharan, N., Ravisankar, V., Valsala, P.A. and Achuthan, C.R. 2017. EGFR gene regulation in colorectal cancer cells by garlic phytocompounds with special emphasis on S-Allyl-L-Cysteine Sulfoxide. Interdiscip Sci Comput Life Sci.,  [Epub ahead of print].
  5. Priyanka, J., Sangeetha, P.D., Ravisankar, V., Nazeem, P.A. and Deepu, M. 2017.Novel Antidiabetic Molecules from the Medicinal Plants of Western Ghats of India, Identified Through Wide-Spectrum in Silico Analyses. Journal of Herbs, Spices & Medicinal Plants., 23:3, 249-262.
  6. Abida, P.S., Preethy, T.T., Baveesh, P., Faseela, K.V., Sindhumole, P., Narayanankutty, M.C. and Subramanyam, D. 2017. Phenotypic evaluation of rice genotypes for high temperature stress for combating future climate change. Trends in Biosciences., 10(11): 2011-2014.
  7. Nabarun, R., Narayanankutty, A., Nazeem, P. A., Valsalan, R., Babu, T. D. and Deepu, M. 2016. Plant phenolics Ferulic acid and p-Coumaric acid inhibit colorectal cancer cell proliferation through EGFR downregulation. Asian Pacific Journal of Cancer Prevention., 17(8): 4017-4021.
  8. Pradeepkumar, T., Deepu, M., Varun, R.C., Veni, K. and Midhila, K.R. 2016. Genetic interrelationship among cowpea varieties elucidated through morphometric, RAPD and SSR analyses. Legume Research.,
  9. Vikram, H.C., Raj, N.M., Kumari, K.T.P., Nybe, E.V. and Deepu, M. 2016. Variability in fruit characteristics of nutmeg (Myristica fragrans Houtt.) under Kerala conditions. Journal of Spices and Aromatic Crops., 25(2): 187-194.
  10. Devilekshmi, S., Nazeem, P.A., Arunaksharan, N.,  Jeksy, J.M. and  Achuthan C.R. 2016. In Silico and Wet Lab Studies Reveal the Cholesterol Lowering Efficacy of Lauric Acid, a Medium Chain Fat of Coconut Oil. Plant Foods Hum Nutr., 71: 410-415.
  11. Manjesh, S., Abida, P.S. and Baburao, T.M. 2016. In-silico Identification of Transcription Factor Binding Sites for Hsp20 Gene Response to Drought in Rice and its Orthologue in Arabidopsis thaliana. Advances in Life Sciences ., 5(18): 7786-7793.
  12. Pujaita, G., Shylaja, M.R. and Nazeem, P.A. 2015. Issr marker based DNA fingerprinting in releasedvarieties and selected superior somaclones of ginger (Zingiber officinale rosc.).The Bioscan., 10(1): 55-61.
  13. Shiny, A.A., Deepu, M., Nazeem, P.A., Abida, P.S., Mathew, S.K. and Valsala, P.A. 2015. Identification and confirmation of trailing type vegetable cowpea resistance to anthracnose: through protein analysis. Tropical Plant Pathology., 40(3): 169-175.
  14. Shruti, B., Abida, P.S., Valsala, P.A., Deepu, M. and Bhaskar, H. 2015. DNA barcoding of spidermites (Prostigmata: Tetranychidae) in vegetables using COI and ITS2 markers. Genome., 58(5): 195.
  15. Neena, L., Haseena, B., Abida, P.S. and Maicykutty, P.M. 2015. Molecular approach in species determination of Tetranychus complex in polyhouse cucumber. Genome., 58(5): 244
  16. Aswini, A., Laila, K.M., Radha, T., .Babylatha, A.K., Abida, P.S. and Krishnan, S. 2015. Morphological Characterisation of jackfruit (Artocarpusheterophyllus.L.) accessions. International Journal on Tropical Agriculture., 33 (2):1611-1615
  17. Thakur, P.P., Deepu, M., Nazeem, P.A., Abida, P.S., Indira, P., Girija, D., Shylaja, M.R. and Valsala, P.A. 2014. Identification of allele specific AFLP markers linked with bacterial wilt [Ralstonia solanacearum (Smith) Yabuuchi et al.] resistance in hot peppers (Capsicum annuum L.). Physiological and Molecular Plant Pathology., 87: 19-24.
  18. Pujaita, G. and Shylaja, M.R. 2014. Chloroplast Genome Engineering Techniques and Capabilities – A.Trends in biosciences., (7): 18.
  19. Shylaja, M.R., Nybe, E.V., Nazeem, P.A., Mathew S.K., Krishnan, S. and Paul, R.. 2014. Aswathy, a new ginger variety from Kerala Agricultural University for green ginger. Indian Journal of Arecanut, Spices and Medicinal Plants., 16(2): 18-20.
  20. Paul, R. and Shylaja, M.R. 2014. Preliminary screening of in vitro raised ginger regenerants to soft rot and bacterial wilt diseases using electrolyte leakage method. Indian Journal of Horticulture., 71(1): 130-133.
  21. Pujaita, G., Shylaja, M.R. and Nazeem, P.A. 2014. RAPD marker based DNA fingerprinting in released varieties and selected superior somaclones of ginger (zingiber officinale rosc.).International Journal of plant animal and environment sciences.,4(2): 221.
  22. Shylaja, M.R., Sashna, P., Chinjusha, V. and Nazeem, P.A. 2014. An efficient micropropagation protocol for Gerbera jamesonii Bolus from flower buds. International Journal of plant animal and environment sciences., 4(3): 641-643.
  23. Belge, S.A., Nazeem, P.A., Devi, S.N., Deepu M., Girme, A.R. and Ekatpur, S.C. 2014, Validation of molecular markers for tagging the combined resistance for bacterial wilt and tomato leaf curl virus diseases in tomato. Journal of Tropical Agriculture., 52: 47-53.
  24. Divyasree, P., Lokesh, K.A., John, P.L., Rajan, V.T.K.S., Deepu M. 2014, A novel methodology for the extraction of quality DNA from nutmeg. Journal of Tropical Agriculture., 52: 79-85.
  25. Paul, R. and Shylaja, M.R. 2013. Screening somaclones of ginger  (Zingiber officinale Rosc.) derived through in vitro mutagenesis to soft rot and bacterial wilt diseases.Journal of Mycopathological Research., 51(1): 151-155.
  26. Paul, R. and Shylaja, M.R. 2013. Correlation and path analysis of somaclones of ginger (Zingiber officinale Rosc.).Journal of Medicinal and Aromatic Plant Sciences., 35(3&4): 175-178
  27. Porat, T.N., Cohen, D., Deepu, M., Kamenetsky, R. and Flaishman, M., 2013, Turned on by heat: differential expression of FT and LFY-like genes in Narcissus tazetta during floral transition. Journal of Experimental Botany., 64: 3273-3284.
  28. Panjikkaran, S.T. and Deepu, M. 2013, An environmentally friendly and cost effective technique for the commercial cultivation of oyster mushroom [Pleurotus florida (Mont.) Singer]. Journal of the Science of Food and Agriculture., 93: 973-976.
  29. Shylaja, M.R., Vijini, K.V. and Nybe, E.V. 2012. Field evaluation of calliclones of black pepper ( Piper nigrum L.). Focus on pepper ( Piper nigrum L.), International Pepper Community., 4(1): 35-41.
  30. Paul, R., Shylaja, M.R. and Nazeem, P. A. 2012. Molecular characterization of somaclones in ginger.Ind. J. Hort., 69(2): 221-225.
  31. Paul, R., Shylaja, M.R. and Nazeem, P.A. 2012. Molecular characterisation of selected somaclones in ginger using RAPD markers.Indian Journal of Horticulture., 69(2): 221-225
  32. Paul, R. and Shylaja, M.R. 2012. Screening of ginger (Zingiber officinale) somaclones derived through indirect organogenesis against soft rot and bacterial wilt diseases.Journal of Medicinal and Aromatic Plant Sciences., 34(1&2): 28-32.
  33. Paul, R. and Shylaja, M.R. 2012. Field evaluation of tissue culture raised somaclones of ginger (Zingiber officinale) for productivity- linked traits.Journal ofMedicinal and Aromatic Plant Sciences., 34(1&2):20-27.
  34. Tirthkar, M.B., Abida, P.S., Nazeem, P.A., Kesavchandran, R., Girija, D. 2012. Phenotyping for  induced systemic tolerance in rice  for water stress mediated by plant growth promoting rhizobacteria. International Journal on Tropical Agriculture., (19): 45-58
  35. Paul, R., Shylaja M.R., Abraham, K. and Nybe, E.V. 2011. Screening somaclones of ginger (Zingiber officinale) for soft rot disease.J. Mycopathol. Res.,49(1): 83-87.
  36. Paul, R. and Shylaja, M.R. 2011. Preliminary screening of ginger (Zingiber officinale) regenerants derived through gamma irradiation of embryogenic cultures to soft rot and bacterial wilt diseases. J. Mycol. Plant. Pathol., 41(4): 59–596.
  37. Deepu, M., Yitzhak, F., Haim D.R. and Rina K., 2011, Effect of long photoperiod on the reproductive and bulbing processes in garlic (Allium sativum L.) genotypes. Environmental and Experimental Botany., 71(2): 166-173.
  38. Sandler-Ziv, D., Fintea, C., Noy Porat T., Deepu, M. and Kamenetsky, R., 2011, Snowflake (Leucojum aestivum L.): Intrabulb florogenesis and forcing for early flowering. Acta Horticulturae., 886: 225-231.
  39. Harish, C., Abida, P.S., Nazeem, P.A., Vasanthnirmal, B. 2011. Genetic diversity of Pseudomonas strains using RAPD- An approach for comparative study between in-silico and in-vitro. International Journal of Integrative Biology., 12(1): 33-35
  40. Abida, P.S., Krishnaveni, S., Murugan, M., Yasodha, P., Velazhahan, R., Jansi Rani, P. and Krishnasamy, V. 2011. Differential gene expression in tomato during compatible and incompatible interaction with Alternariasolan. Archives of Phytopathology and Plant Protection., 44:12, 1147-1164                                                                                
  41. Harish, C., Abida, P.S., Nazeem, P.A., Vasanth, N.B. 2011. Genetic diversity of Pseudomonas strains using random DNA markers. International Journal of Biotechnology Research., 4(2): 49-51
  42. Shylaja, M.R. and Nybe, E.V. 2010. Productivity improvement in coconut : Role of  right varieties and selection of quality planting materials. Indian coconut Journal., 3(5).
  43. Shylaja, M.R., Resmi, P., Nybe, E.V., Koshy, A., Nazeem, P.A., Valsala, P.A. and Krishnan, S. 2010. Two new ginger varieties from Kerala Agricultural University. Indian Journal of Arecanut, Spices and Medicinal Plants., 12(2):  3-4.
  44. Resmi, P. and Shylaja, M.R. 2010. Indirect organogenesis in ginger.Indian J.Hort.,67(4): 513-517.
  45. Abida, P.S., Mohankumar, S. and Yasodha, P. 2010. Cross species amplification of Solanumlycopersicon mill. accessions using Solanummelongena microsatellite markers. International Journal on Tropical Agriculture., (28):3-4
  46. Abida, P.S.,Krishnaveni, S., Murugan, M., Yasodha, P., Velazhahan, R. and Krishnasamy, V. 2010. Differential gene expression in tomato during compatible and incompatible interaction with Alternariasolani   Manuscript submitted to Plant physiology (Manuscript ID No: PLANTPHYSIOL/ 2010/154849) American Society of Plant Biologists, 15501 Monona Drive, Rockville, MD20855-2768 USA
  47. Resmi, P., Shylaja, M.R. and Koshy, A. 2009. Screening somaclones of ginger (Zingiber officinale) for bacterial wilt disease. Indian Phytopathology., 62(4): 424-428.
  48. Resmi, P. and Shylaja, M.R . 2009. Production of toxic metabolites in cultures by Pythium aphanidermatum and Ralstonia solnacearum and bioassay of the metabolites.Journal of Mycology and Plant Pathology., 39(3): 422-426.
  49. Yasodha, P., Murugan, M., Abida, P.S., Balasubramanian, P. 2009. Host Plant Mediated Population Variations of Cotton Whitefly Bemisiatabaci Gennadius (Aleyrodidae: Homoptera) Characterized with Random DNA markers. American journal of Biochemistry and Biotechnology., 5(1):40-46
  50. Murugan, M., Yasodha, P., Abida, P.S., Gautam, Sharma. 2009. Genetic Similarity of Eggplant Shoot and Fruit borer, Leucinodesorbonalis, Populations. DNA and Cell Biology., 28 (1):1-5
  51. Abida, P.S., Yasodha, P. 2009. A Promising Technique for Gene  Expression Studies in Applied Biology. International Journal on Tropical Agriculture., 27:3-4
  52. Dagade, S.B. and Shylaja, M.R. 2007. Enzymic studies on Phytophthoracapsici inoculated and uninoculated plants of Piper species. Geobios., 34 (2-3): 149-152.
  53. Shylaja, M.R. and Peter, K.V. 2007. Spices in Nutraceutical and Health Food Industry.Acta Hort., 756: 369-377.
  54. Dagade, S.B. and Shylaja, M.R. 2006. Role of phenols, sugars and amino acids in relation to Phytophthora foot rot disease of black pepper (Piper nigrum L.). Geobios., 34(1): 87-89.
  55. Sanchu, C.R., Shylaja, M.R. and Nybe, E.V. 2003. Screening of black pepper (Piper nigrum L.) calliclones against Phytophthora foot rot. Journal of Mycology and Plant Pathology., 33(2).
  56. Shylaja, M.R. and Sreekandan Nair, G. 2000. Response of black pepper (Piper nigrum L.) variety Panniyur – 1 and cultivars to indirect organogenesis. Journal of Tropical Agriculture., 38(1&2).
  57. Shylaja, M.R., Asha, S.M.  and  Sreekandan Nair, G.  1998. Effect of NP and K on the leaf alkaloid content in Catheranthus roseus. L. South Indian Horticulture., 46(3&4): 192-195.
  58. Shylaja, M.R., Asha, S.M., Sreekandan Nair and Mercy, K.A. 1997. Influence of seed treatments and storage on the germination of Catharanthus roseus L. Indian Cocoa, Arecanut and Spices journal. Vol.XXI, No.2.
  59. Shylaja, M.R., Nair, G.S. and Augustin, A.  1997. In vitro production of toxic metabolite(s) by Phytophthora capscici and partial purification of the metabolite(s). Journal of Tropical Agriculture., 35: 10-15.
  60. Shylaja, M.R. and Nair, G.S.  1997. Effect of toxic metabolite(s) of Phytophthora capsici on various stages of morphogenesis of black pepper calli. Journal of Tropical Agriculture.
  61. Shylaja, M.R., Asha, S.M., Sreekandan Nair and Mercy, K.A. 1996. Response of Catharanthus roseus to Nitrogen, Phosphurus and Potassium fertilization. Indian Cocoa, Arecanut and Spices journal. Vol.XX, No.3  July-Sept.
  62. Shylaja, M.R., Lissamma, J., Prasannakumari Amma, Nybe E.V. and Nair, G.S. 1996. Seasonal variation in the recovery of cinnamon (Cinnamomum verum) leaf oil. Spice India 9(1).
  63. Shylaja, M.R., Nair, G.S. and Mathew, J. 1996. Screening of black pepper (Piper ingenim L.) calliclones for phytophthora foot rot resistance or tolerance. Journal of Tropical Agriculture., 34: (115-120).
  64. Manju, R.V., Abida, P.S., Sudharshana, L., Nataraja, K.N., Sashidhar, V,R. 1995. Unusual discrimination against carrier protein antibodies during partial purification of hapten –protein polyclonal antibodies to plant stress hormones. Indian Journal of Experimental Biology., 33:1-5.
  65. Abida, P.S., Sashidhar, V.R., Manju, R.V., Prasad, T.G., Sudharshana, L. 1994. Root-shoot communication in drying soil is mediated by the stress  hormones,abscisicacid,andcytokinin synthesized in the roots. Current Science., 66:668-672

E. Book Chapters

  1. Deepu Mathew, 2017, Biosafety and bioregulatory mechanism in transgenic crops. In: Genetic Engineering of Horticultural Crops, Eds. Rout, G. R. and Peter, K. V., Elsevier, In press.
  2. Deepu Mathew, 2017, The Molecular Biology of Flowering. In: Science of Horticulture Vol. 3 (Ed.) Peter, K. V., In press.
  3. Deepu Mathew, 2011, Photoautotrophic micropropagation. In: Manual on Advances in Micropropagation of Horticulture Crops, Ed. R. Keshavachandran, Kerala Agricultural University, India, pp. 99-100.
  4. Deepu Mathew, 2011, Advances in micropropagation of vegetable crops. In: Manual on Advances in Micropropagation of Horticulture Crops, Ed. R. Keshavachandran, Kerala Agricultural University, India, pp. 119-130.
  5. Deepu Mathew, 2013, DNA Barcoding and its applications in Horticultural crops. In: Peter, K.V. (Ed.), Biotechnology in Horticulture: Methods and Applications, New India Publishing Agency, New Delhi,(ISBN: 9789381450918), pp.25-50.
  6. Deepu Mathew, 2015, Primer and barcode gap identification and DNA barcode generation for species discrimination in plants. In: Nazeem, P.A. (Ed.), Bioinformatics and its Applications in Agriculture, Kerala Agricultural University.
  7. Yasodha Perumal., Abida, P.S., Philomena George. 2008.Endophytic microbes against insect pests: Book chapter in the  “International Conference on Biotechnology Innovations and Challenges in Agri, Food, Biofuel, And Healthcare-ICBIC-08” Karunya University, Coimbatore 11th-12th Dec 2008.Published by Exel India Publishers ISBN No:978-93-
  8. Abida, P.S., Yasodha Perumal., Philomena George., Vinothkumar, B. 2008. Differential display reverse transcriptase PCR and its applications-a review Book chapter in the  “International Conference on Biotechnology Innovations and Challenges in Agri, Food, Biofuel, And Healthcare-ICBIC-08” Karunya University, Coimbatore 11th-12th Dec 2008.Published by Exel India Publishers ISBN No:978-93-

 


Last updated on June 16, 2017

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College of Horticulture
Kerala Agricultural University
Vellanikkara
KAU P.O.
Thrissur Kerala 680656
:+91-487 2438300
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